Pymol 3

PyMOL visualising e2 rotamers

This morning whilst writing some reports I wanted to show some rotamer populations of my spin label attached to the protein. Whilst MMM provides visualisation, and having had discussions with Jeschke I understand just how difficult it is to do, I do …

PyMOL visualising binding interfaces

Today I’ve been trying to come up with a nice way of visualising the binding interface between protein-protein or protein-DNA complexes. What follows is a quick little walk-through mostly for my own purposes so that I can remember what …

PyMOL with Ubuntu 11.10 rendering problems

Recently my (Ubuntu 11.10 64bit) machine stopped playing nice with PyMOL and whenever I tried to render or move an object I was facing a >40 second render time, while both of my CPU cores jumped to >90%

When I paid close attention to the …